Journal of International Reproductive Health/Family Planning ›› 2022, Vol. 41 ›› Issue (6): 487-493.doi: 10.12280/gjszjk.20220361
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ZHOU Li-wei, ZHENG Shu-dong, HUANG Shuo, LU Ting, LIU Yue(), DING Zhi-de(
)
Received:
2022-07-28
Published:
2022-11-15
Online:
2022-11-18
Contact:
LIU Yue,DING Zhi-de
E-mail:liuyue@shsmu.edu.cn;zding@shsmu.edu.cn
ZHOU Li-wei, ZHENG Shu-dong, HUANG Shuo, LU Ting, LIU Yue, DING Zhi-de. Research Progress of Bioinformatics Technology in Reproductive System[J]. Journal of International Reproductive Health/Family Planning, 2022, 41(6): 487-493.
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[1] | National Human Genome Research Institute. Bioinformatics[EB/OL]. https://www.genome.gov/genetics-glossary/Bioinformatics. |
[2] |
Wei L, Wang J, Lampert E, et al. Intratumoral and Intertumoral Genomic Heterogeneity of Multifocal Localized Prostate Cancer Impacts Molecular Classifications and Genomic Prognosticators[J]. Eur Urol, 2017, 71(2):183-192. doi: 10.1016/j.eururo.2016.07.008.
doi: S0302-2838(16)30406-7 pmid: 27451135 |
[3] |
Ballabio S, Craparotta I, Paracchini L, et al. Multisite analysis of high-grade serous epithelial ovarian cancers identifies genomic regions of focal and recurrent copy number alteration in 3q26.2 and 8q24.3[J]. Int J Cancer, 2019, 145(10):2670-2681. doi: 10.1002/ijc.32288.
doi: 10.1002/ijc.32288 pmid: 30892690 |
[4] |
Lee YJ, Kim D, Shim JE, et al. Genomic profiling of the residual disease of advanced high-grade serous ovarian cancer after neoadjuvant chemotherapy[J]. Int J Cancer, 2020, 146(7):1851-1861. doi: 10.1002/ijc.32729.
doi: 10.1002/ijc.32729 pmid: 31603993 |
[5] |
Stelloo S, Nevedomskaya E, Kim Y, et al. Endogenous androgen receptor proteomic profiling reveals genomic subcomplex involved in prostate tumorigenesis[J]. Oncogene, 2018, 37(3):313-322. doi: 10.1038/onc.2017.330.
doi: 10.1038/onc.2017.330 pmid: 28925401 |
[6] |
Corona RI, Seo JH, Lin X, et al. Non-coding somatic mutations converge on the PAX8 pathway in ovarian cancer[J]. Nat Commun, 2020, 11(1):2020. doi: 10.1038/s41467-020-15951-0.
doi: 10.1038/s41467-020-15951-0 |
[7] |
Yatsenko SA, Wood-Trageser M, Chu T, et al. A high-resolution X chromosome copy-number variation map in fertile females and women with primary ovarian insufficiency[J]. Genet Med, 2019, 21(10):2275-2284. doi: 10.1038/s41436-019-0505-2.
doi: 10.1038/s41436-019-0505-2 pmid: 30948856 |
[8] |
Cariati F, D′Argenio V, Tomaiuolo R. The evolving role of genetic tests in reproductive medicine[J]. J Transl Med, 2019, 17(1):267. doi: 10.1186/s12967-019-2019-8.
doi: 10.1186/s12967-019-2019-8 pmid: 31412890 |
[9] |
Cuppens T, Moisse M, Depreeuw J, et al. Integrated genome analysis of uterine leiomyosarcoma to identify novel driver genes and targetable pathways[J]. Int J Cancer, 2018, 142(6):1230-1243. doi: 10.1002/ijc.31129.
doi: 10.1002/ijc.31129 pmid: 29063609 |
[10] |
Guo J, Grow EJ, Yi C, et al. Chromatin and Single-Cell RNA-Seq Profiling Reveal Dynamic Signaling and Metabolic Transitions during Human Spermatogonial Stem Cell Development[J]. Cell Stem Cell, 2017, 21(4):533-546.e6. doi: 10.1016/j.stem.2017.09.003.
doi: S1934-5909(17)30370-3 pmid: 28985528 |
[11] |
Stévant I, Kühne F, Greenfield A, et al. Dissecting Cell Lineage Specification and Sex Fate Determination in Gonadal Somatic Cells Using Single-Cell Transcriptomics[J]. Cell Rep, 2019, 26(12):3272-3283.e3. doi: 10.1016/j.celrep.2019.02.069.
doi: S2211-1247(19)30248-7 pmid: 30893600 |
[12] |
Wang JJ, Ge W, Zhai QY, et al. Single-cell transcriptome landscape of ovarian cells during primordial follicle assembly in mice[J]. PLoS Biol, 2020, 18(12):e3001025. doi: 10.1371/journal.pbio.3001025.
doi: 10.1371/journal.pbio.3001025 URL |
[13] |
Berglund E, Maaskola J, Schultz N, et al. Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity[J]. Nat Commun, 2018, 9(1):2419. doi: 10.1038/s41467-018-04724-5.
doi: 10.1038/s41467-018-04724-5 pmid: 29925878 |
[14] |
Garcia-Alonso L, Handfield LF, Roberts K, et al. Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro[J]. Nat Genet, 2021, 53(12):1698-1711. doi: 10.1038/s41588-021-00972-2.
doi: 10.1038/s41588-021-00972-2 pmid: 34857954 |
[15] |
Cao J, Spielmann M, Qiu X, et al. The single-cell transcriptional landscape of mammalian organogenesis[J]. Nature, 2019, 566(7745):496-502. doi: 10.1038/s41586-019-0969-x.
doi: 10.1038/s41586-019-0969-x URL |
[16] |
Zeng Z, Lin X, Xia T, et al. Identification of Crucial lncRNAs, miRNAs, mRNAs, and Potential Therapeutic Compounds for Polycystic Ovary Syndrome by Bioinformatics Analysis[J]. Biomed Res Int, 2020, 2020:1817094. doi: 10.1155/2020/1817094.
doi: 10.1155/2020/1817094 |
[17] |
Guo Y, Bai D, Liu W, et al. Altered sperm tsRNAs in aged male contribute to anxiety-like behavior in offspring[J]. Aging Cell, 2021, 20(9):e13466. doi: 10.1111/acel.13466.
doi: 10.1111/acel.13466 |
[18] |
Hashimoto Y, Greco TM, Cristea IM. Contribution of Mass Spectrometry-Based Proteomics to Discoveries in Developmental Biology[J]. Adv Exp Med Biol, 2019, 1140:143-154. doi: 10.1007/978-3-030-15950-4_8.
doi: 10.1007/978-3-030-15950-4_8 pmid: 31347046 |
[19] |
Bernardino RMM, Leão R, Henrique R, et al. Extracellular Vesicle Proteome in Prostate Cancer: A Comparative Analysis of Mass Spectrometry Studies[J]. Int J Mol Sci, 2021, 22(24):13605. doi: 10.3390/ijms222413605.
doi: 10.3390/ijms222413605 URL |
[20] | 张英杰, 路芳, 隋凯悦. 益胃汤对初老雌性大鼠生殖机能影响的蛋白质组学研究[J]. 中药药理与临床, 2018, 34(3):11-13,192. |
[21] |
Bittremieux W, Tabb DL, Impens F, et al. Quality control in mass spectrometry-based proteomics[J]. Mass Spectrom Rev, 2018, 37(5):697-711. doi: 10.1002/mas.21544.
doi: 10.1002/mas.21544 pmid: 28802010 |
[22] |
Lahiri S, Aftab W, Walenta L, et al. MALDI-IMS combined with shotgun proteomics identify and localize new factors in male infertility[J]. Life Sci Alliance, 2021, 4(3):e202000672. doi: 10.26508/lsa.202000672.
doi: 10.26508/lsa.202000672 URL |
[23] |
邱晓菲, 李昌, 徐娟. 应用基质辅助激光解吸电离飞行时间质谱分析宫颈鳞癌早期浸润蛋白质[J]. 中华妇幼临床医学杂志(电子版), 2011, 7(4):324-328. doi: 10.3877/cma.j.issn.1673-5250.2011.04.010.
doi: 10.3877/cma.j.issn.1673-5250.2011.04.010 |
[24] | 朱宇. 质谱技术在多囊卵巢综合征子宫内膜生物标记物研究中的应用[D]. 北京: 中国医学科学院北京协和医学院, 2020. |
[25] |
Kumar B, Dey AK, Saha S, et al. Dynamic Alteration in the Vaginal Secretory Proteome across the Early and Mid-Trimesters of Pregnancy[J]. J Proteome Res, 2021, 20(2):1190-1205. doi: 10.1021/acs.jproteome.0c00433.
doi: 10.1021/acs.jproteome.0c00433 pmid: 33497241 |
[26] |
Berard AR, Perner M, Mutch S, et al. Understanding mucosal and microbial functionality of the female reproductive tract by metaproteomics: Implications for HIV transmission[J]. Am J Reprod Immunol, 2018, 80(2):e12977. doi: 10.1111/aji.12977.
doi: 10.1111/aji.12977 URL |
[27] |
Chen D, Fan F, Zhao X, et al. Single Cell Chemical Proteomics with Membrane-Permeable Activity-Based Probe for Identification of Functional Proteins in Lysosome of Tumors[J]. Anal Chem, 2016, 88(4):2466-2471. doi: 10.1021/acs.analchem.5b04645.
doi: 10.1021/acs.analchem.5b04645 pmid: 26810843 |
[28] |
Hitit M, Özbek M, Ayaz-Guner S, et al. Proteomic fertility markers in ram sperm[J]. Anim Reprod Sci, 2021, 235:106882. doi: 10.1016/j.anireprosci.2021.106882.
doi: 10.1016/j.anireprosci.2021.106882 URL |
[29] |
Zhao J, Zhai X, Ma Y, et al. Anatomic characteristics of epididymis based on histology, proteomic, and 3D reconstruction[J]. Andrology, 2020, 8(6):1787-1794. doi: 10.1111/andr.12842.
doi: 10.1111/andr.12842 URL |
[30] |
Jarvis S, Gethings LA, Samanta L, et al. High fat diet causes distinct aberrations in the testicular proteome[J]. Int J Obes(Lond), 2020, 44(9):1958-1969. doi: 10.1038/s41366-020-0595-6.
doi: 10.1038/s41366-020-0595-6 URL |
[31] |
McClements L, Richards C, Patel N, et al. Impact of reduced uterine perfusion pressure model of preeclampsia on metabolism of placenta, maternal and fetal hearts[J]. Sci Rep, 2022, 12(1):1111. doi: 10.1038/s41598-022-05120-2.
doi: 10.1038/s41598-022-05120-2 pmid: 35064159 |
[32] |
Reynolds S, Calvert SJ, Paley MN, et al. 1H Magnetic Resonance Spectroscopy of live human sperm[J]. Mol Hum Reprod, 2017, 23(7):441-451. doi: 10.1093/molehr/gax025.
doi: 10.1093/molehr/gax025 pmid: 28431025 |
[33] |
Engel KM, Baumann S, Rolle-Kampczyk U, et al. Metabolomic profiling reveals correlations between spermiogram parameters and the metabolites present in human spermatozoa and seminal plasma[J]. PLoS One, 2019, 14(2):e0211679. doi: 10.1371/journal.pone.0211679.
doi: 10.1371/journal.pone.0211679 URL |
[34] |
Walters KA, Eid S, Edwards MC, et al. Steroid profiles by liquid chromatography-mass spectrometry of matched serum and single dominant ovarian follicular fluid from women undergoing IVF[J]. Reprod Biomed Online, 2019, 38(1):30-37. doi: 10.1016/j.rbmo.2018.10.006.
doi: S1472-6483(18)30570-4 pmid: 30527851 |
[35] |
Yuan X, Hu S, Li L, et al. Metabolomic Analysis of SCD during Goose Follicular Development: Implications for Lipid Metabolism[J]. Genes (Basel), 2020, 11(9):1001. doi: 10.3390/genes11091001.
doi: 10.3390/genes11091001 URL |
[36] |
Yu L, Yang X, Ma B, et al. Abnormal arachidonic acid metabolic network may reduce sperm motility via P38 MAPK[J]. Open Biol, 2019, 9(4):180091. doi: 10.1098/rsob.180091.
doi: 10.1098/rsob.180091 URL |
[37] |
Zhao K, Zhang J, Xu Z, et al. Metabolomic Profiling of Human Spermatozoa in Idiopathic Asthenozoospermia Patients Using Gas Chromatography-Mass Spectrometry[J]. Biomed Res Int, 2018, 2018:8327506. doi: 10.1155/2018/8327506.
doi: 10.1155/2018/8327506 |
[38] |
Ilhan ZE, Łaniewski P, Thomas N, et al. Deciphering the complex interplay between microbiota, HPV, inflammation and cancer through cervicovaginal metabolic profiling[J]. EBioMedicine, 2019, 44:675-690. doi: 10.1016/j.ebiom.2019.04.028.
doi: S2352-3964(19)30267-1 pmid: 31027917 |
[39] |
Shi F, Zhang Z, Wang J, et al. Analysis by Metabolomics and Transcriptomics for the Energy Metabolism Disorder and the Aryl Hydrocarbon Receptor Activation in Male Reproduction of Mice and GC-2spd Cells Exposed to PM2.5[J]. Front Endocrinol(Lausanne), 2022, 12:807374. doi: 10.3389/fendo.2021.807374.
doi: 10.3389/fendo.2021.807374 |
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