Objective: To evaluate systematically the neonatal outcomes of single delivery after embryo transfer at blastocyst and cleavage stages in the fresh cycles. Methods: A systematic search was performed on PubMed, Embase, Cochrane Library, Web of Science, CBM, CNKI, Wanfang and VIP databases (up to November 2020) to search the related studies on the neonatal outcomes of single birth after blastocyst and cleavage stage fresh embryo transfer. The evaluators screened the literature, evaluated the quality and extracted the data according to the inclusion and exclusion criteria. The RevMan 5.3 software was used for data analysis. Results: Thirteen studies were scrutinized for this meta-analysis. The overall showed that the incidences of very preterm birth (VPTB, RR=1.17, 95%CI: 1.08-1.26, P<0.000 1) and large for gestational age (LGA, RR=1.11, 95%CI: 1.04-1.19, P=0.002) were significantly increased, and the incidence of small for gestational age (SGA, RR=0.85, 95%CI: 0.78-0.93, P=0.000 6) was significantly decreased, in the single delivery after the blastocyst embryo transfer when compared with the embryo transfer at cleavage stage. There were no significant differences in the incidences of preterm birth (PTB, RR=1.10, 95%CI: 0.98-1.22, P=0.09), low birth weight (LBW, RR=1.00, 95%CI: 0.94-1.07, P=0.90) and very low birth weight (VLBW, RR=0.99, 95%CI: 0.89-1.10, P=0.88). Subgroup analysis showed that the incidence of neonatal PTB in the blastocyst group was significantly higher than that in the cleavage-embryo group (RR=1.28, 95%CI: 1.23-1.33, P<0.000 01). Conclusions: In the neonatal outcomes of single delivery in the fresh cycles, blastocyst transfer has the higher risks of VPTB and LGA and lower risk of SGA when compared with cleavage embryo transfer.